Thanks Walk Bike New Jersey for this report :
http://walkbikejersey.blogspot.com/2011/08/nj-transit-bikes-on-trains-access.html
The new policy says “Cyclists and Segway users can only board or alight trains at a station with a high-level or mini high-level platform. For safety reasons, cyclists are not permitted to board or alight trains at a low-level platform, including Hoboken Terminal.”
This effectively ends my NJ Transit use. : (